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Research Output 1996 2019

2019

A Review of Rice Starch Digestibility: Effect of Composition and Heat-Moisture Processing

Khatun, A., Waters, D. L. E. & Liu, L., 13 Jun 2019, In : Starch/Staerke. 1900090.

Research output: Contribution to journalReview article

rice starch
Starch
Moisture
Hot Temperature
digestibility
2 Citations (Scopus)

Australian rice varieties vary in grain yield response to heat stress during reproductive and grain filling stages

Ali, F., Waters, D. L. E., Ovenden, B., Bundock, P., Raymond, C. A. & Rose, T. J., Apr 2019, In : Journal of Agronomy and Crop Science. 205, 2, p. 179-187 9 p.

Research output: Contribution to journalArticle

filling period
heat stress
grain yield
rice
flowering

Bromoperoxidase producing bacillus spp. isolated from the hypobranchial glands of a muricid mollusc are capable of tyrian purple precursor biogenesis

Ngangbam, A. K., Mouatt, P., Smith, J., Waters, D. L. E. & Benkendorff, K., 01 Jan 2019, In : Marine Drugs. 17, 5, 264.

Research output: Contribution to journalArticle

Open Access
File
Mollusca
Bacillus
Agar
Liquid Chromatography
Sulfates

Chemical volatiles present in cotton gin trash: A by-product of cotton processing

Egbuta, M. A., McIntosh, S., Waters, D. L. E., Vancov, T. & Liu, L., 18 Sep 2019, In : PLoS One. 14, 9, p. 1-17 17 p., e0222146.

Research output: Contribution to journalArticle

Open Access
cotton gin trash
Terpenes
volatile compounds
Cotton
Byproducts

Heat stress during grain fill reduces head rice yield through genotype dependant increased husk biomass and grain breakage

Ali, F., Waters, D. L. E., Ovenden, B., Bundock, P., Raymond, C. A. & Rose, T. J., 01 Nov 2019, In : Journal of Cereal Science. 90, 102820.

Research output: Contribution to journalArticle

hulls
Biomass
heat stress
Hot Temperature
Head

Re-sequencing Resources to Improve Starch and Grain Quality in Rice

Subbaiyan, G. K., Masouleh, A. K., Furtado, A., Waters, D. L. E. & Henry, R. J., 01 Jan 2019, Rice Grain Quality : Methods and Protocols. Sreenivasulu, N. (ed.). 1st ed. New York: Humana Press Inc., p. 201-240 40 p. (Methods in Molecular Biology; vol. 1892).

Research output: Book chapter/Published conference paperChapter (peer-reviewed)

Starch
Genome
Genes
Oryza
Molecular Biology
2018

Optimization of an In Vitro Starch Digestibility Assay for Rice

Khatun, A., Waters, D. L. E. & Liu, L., 01 Nov 2018, In : Starch/Staerke. 70, 11-12, p. 1-9 9 p., 1700340.

Research output: Contribution to journalArticle

Starch
Assays
digestibility
Glucose Oxidase
starch
3 Citations (Scopus)

Rice grain protein composition influences head rice yield

Balindong, J. L., Ward, R. M., Rose, T. J., Liu, L., Raymond, C. A., Snell, P. J., Ovenden, B. W. & Waters, D. L. E., Mar 2018, In : Cereal Chemistry. 95, 2, p. 253-263 11 p.

Research output: Contribution to journalArticle

rice protein
grain protein
protein composition
Head
rice
9 Citations (Scopus)

Rice grain protein composition influences instrumental measures of rice cooking and eating quality

Balindong, J. L., Ward, R., Liu, L., Rose, T., Pallas, L., Ovenden, B. W., Snell, P. J. & Waters, D. LE., 01 Jan 2018, In : Journal of Cereal Science. 79, 1, p. 35-42 8 p.

Research output: Contribution to journalArticle

rice protein
grain protein
Cooking
protein composition
cooking

Transcriptional response of rice flag leaves to restricted external phosphorus supply during grain filling in rice cv. Ir64

Jeong, K., Pantoja, O., Baten, A., Waters, D., Kretzschmar, T., Wissuwa, M., Julia, C. C., Heuer, S. & Rose, T. J., 13 Sep 2018, In : PLoS One. 13, 9, p. 1-19 19 p., e0203654.

Research output: Contribution to journalArticle

Open Access
File
filling period
Phosphorus
Genes
flowering
phosphorus
2017
2 Citations (Scopus)

Analysis of Lysophospholipid content in low phytate rice mutants

Tong, C., Chen, Y., Tan, Y., Liu, L., Waters, D. L. E., Rose, T. J., Shu, Q. & Bao, J., Jun 2017, In : Journal of Agricultural and Food Chemistry. 65, 26, p. 5435-5441 7 p.

Research output: Contribution to journalArticle

Lysophospholipids
Phytic Acid
phytic acid
rice
mutants
10 Citations (Scopus)
4 Downloads (Pure)

Biological importance of cotton by-products relative to chemical constituents of the cotton plant

Egbuta, M. A., McIntosh, S., Waters, D. L. E., Vancov, T. & Liu, L., 01 Jan 2017, In : Molecules. 22, 1, p. 1-25 25 p., 93.

Research output: Contribution to journalReview article

Open Access
File
Gossypium
cotton
Phytochemicals
Cotton
Byproducts
5 Downloads (Pure)

Genotypic variation in wheat flour lysophospholipids

Liu, L., Guo, Q., He, Z., Xia, X., Waters, D. L. E., Raymond, C. A. & King, G. J., 01 Jun 2017, In : Molecules. 22, 6, p. 1-10 10 p., 909.

Research output: Contribution to journalArticle

Open Access
File
Lysophospholipids
flour
wheat
starches
Flour
12 Citations (Scopus)
6 Downloads (Pure)

Phosphorus remobilization from rice flag leaves during grain filling: An RNA-seq study

Jeong, K., Baten, A., Waters, D. L. E., Pantoja, O., Julia, C. C., Wissuwa, M., Heuer, S., Kretzschmar, T. & Rose, T. J., 01 Jan 2017, In : Plant Biotechnology Journal. 15, 1, p. 15-26 12 p.

Research output: Contribution to journalArticle

Open Access
File
Starvation
filling period
Phosphorus
RNA
phosphorus
1 Citation (Scopus)
1 Downloads (Pure)

Prospects for genetic improvement in internal nitrogen use efficiency in rice

Rose, T. J., Kretzschmar, T., Waters, D. LE., Balindong, J. L. & Wissuwa, M., 2017, In : Agronomy. 7, 4, p. 1-12 12 p., 70.

Research output: Contribution to journalArticle

Open Access
File
nutrient use efficiency
genetic improvement
grain protein
harvest index
rice
5 Citations (Scopus)
4 Downloads (Pure)

Remobilisation of phosphorus fractions in rice flag leaves during grain filling: Implications for photosynthesis and grain yields

Jeong, K., Julia, C. C., Waters, D. L. E., Pantoja, O., Wissuwa, M., Heuer, S., Liu, L. & Rose, T. J., 01 Nov 2017, In : PLoS One. 12, 11, p. 1-15 15 p., e0187521.

Research output: Contribution to journalArticle

Open Access
File
Photosynthesis
filling period
Phosphorus
grain yield
photosynthesis
2016
8 Citations (Scopus)

Arbuscular mycorrhizal fungi: effects on plant terpenoid accumulation

Welling, M. T., Liu, L., Rose, T. J., Waters, D. L. E. & Benkendorff, K., 01 Jul 2016, In : Plant biology (Stuttgart, Germany). 18, 4, p. 552-562 11 p.

Research output: Contribution to journalReview article

terpenoids
mycorrhizal fungi
fungus
symbiosis
effect
2 Citations (Scopus)
3 Downloads (Pure)

Association mapping and marker development of genes for starch lysophospholipid synthesis in rice

Chuan, T., Lei, L., Waters, D. L. E. & Jin-song, B., 01 Nov 2016, In : Rice Science. 23, 6, p. 287-296 10 p.

Research output: Contribution to journalArticle

Open Access
File
Lysophospholipids
Starch
chromosome mapping
starch
rice
5 Citations (Scopus)
wild rice
Phosphorus
rice
tolerance
phosphorus
5 Citations (Scopus)

Optimisation and standardisation of extraction and HPLC analysis of rice grain protein

Balindong, J. L., Liu, L., Ward, R. M., Barkla, B. J. & Waters, D. L. E., 01 Nov 2016, In : Journal of Cereal Science. 72, p. 124-130 7 p.

Research output: Contribution to journalArticle

High pressure liquid chromatography
rice protein
grain protein
standardization
Standardization
1 Citation (Scopus)

Phenolic compounds and antioxidant capacity of brown rice in China

Ye, L., Zhou, S., Liu, L., Liu, L., Waters, D. L. E., Zhong, K., Zhou, X., Ma, X. & Liu, X., 01 Aug 2016, In : International Journal of Food Engineering. 12, 6, p. 537-546 10 p.

Research output: Contribution to journalArticle

brown rice
Antioxidants
phenolic compounds
China
antioxidants
3 Citations (Scopus)
2 Downloads (Pure)

Transcriptome of the Australian mollusc Dicathais orbita provides insights into the biosynthesis of indoles and choline esters

Baten, A., Ngangbam, A. K., Waters, D. L. E. & Benkendorff, K., 01 Jul 2016, In : Marine Drugs. 14, 7, p. 14 7 p., 135.

Research output: Contribution to journalArticle

Open Access
File
Indoles
Mollusca
Choline
Transcriptome
Esters
2015
6 Citations (Scopus)

Characterization of bacterial communities associated with the Tyrian purple producing gland in a marine gastropod

Ngangbam, A. K., Baten, A., Waters, D. L. E., Whalan, S. & Benkendorff, K., 21 Oct 2015, In : PLoS One. 10, 10, p. 1-19 19 p., e0140725.

Research output: Contribution to journalArticle

Open Access
Gastropoda
bacterial communities
Foot
Bacteria
bacteria

Genome wide polymorphisms and yield heterosis in rice (Oryza sativa subsp. indica)

Waters, D. L. E., Subbaiyan, G. K., Mani, E., Singh, S., Vaddadi, S., Baten, A. & Henry, R. J., 01 Dec 2015, In : Tropical Plant Biology. 8, 3-4, p. 117-125 9 p.

Research output: Contribution to journalArticle

Hybrid Vigor
heterosis
Oryza sativa
Single Nucleotide Polymorphism
genetic polymorphism
4 Citations (Scopus)

Indole-producing bacteria from the biosynthetic organs of a muricid mollusc could contribute to tyrian purple production

Ngangbam, A. K., Waters, D. L. E., Whalan, S., Baten, A. & Benkendorff, K., 01 Aug 2015, In : Journal of Shellfish Research. 34, 2, p. 443-454 12 p.

Research output: Contribution to journalArticle

indoles
mollusc
molluscs
bacterial communities
bacterium
43 Citations (Scopus)
1 Downloads (Pure)

Relationships of wild and domesticated rices (Oryza AA genome species) based upon whole chloroplast genome sequences

Wambugu, P. W., Brozynska, M., Furtado, A., Waters, D. L. & Henry, R. J., 10 Sep 2015, In : Scientific Reports. 5, p. 1-9 9 p., 13957.

Research output: Contribution to journalArticle

Open Access
File
Chloroplast Genome
Genome
Gene Pool
Chloroplasts
Phylogeny
10 Citations (Scopus)

The contribution of lysophospholipids to pasting and thermal properties of nonwaxy rice starch

Tong, C., Liu, L., Waters, D. L. E., Huang, Y. & Bao, J., 24 Jul 2015, In : Carbohydrate Polymers. 133, p. 187-193 7 p., 10103.

Research output: Contribution to journalArticle

Lysophospholipids
Starch
Thermodynamic properties
Amylose
Viscosity
2014

A method for discovery of genome-wide SNP between any two genotypes from whole-genome re-sequencing data

Gopala Krishnan, S., Waters, D. L. E. & Henry, R. J., 2014, Cereal Genomics: Methods and Protocols. Henry, R. & Furtado, A. (eds.). Totowa, NJ: Humana Press Inc., Vol. 1099. p. 287-294 8 p. (Methods in Molecular Biology; vol. 1099).

Research output: Book chapter/Published conference paperChapter in textbook/reference book

Single Nucleotide Polymorphism
Genotype
Genome
Breeding
Computational Biology
21 Citations (Scopus)

Australian wild rice reveals pre-domestication origin of polymorphism deserts in rice genome

Gopala, K. S., Waters, D. L. E. & Henry, R. J., 06 Jun 2014, In : PLoS One. 9, 6, p. 1-6 6 p., e98843.

Research output: Contribution to journalArticle

Open Access
domestication
Polymorphism
deserts
Genes
genetic polymorphism
23 Citations (Scopus)

Determination of starch lysophospholipids in rice using liquid chromatography-mass spectrometry (LC-MS)

Liu, L., Tong, C., Bao, J., Waters, D. L. E., Rose, T. J. & King, G. J., 23 Jun 2014, In : Journal of Agricultural and Food Chemistry. 62, 28, p. 6600-6607 8 p.

Research output: Contribution to journalArticle

Lysophospholipids
rice starch
Liquid chromatography
Liquid Chromatography
Starch
3 Citations (Scopus)

Genome walking

Shapter, F. M. & Waters, D. L. E., 2014, Cereal Genomics: Methods and Protocols. Henry, R. & Furtado, A. (eds.). Totowa, NJ: Humana Press Inc., Vol. 1099. p. 133-146 14 p. (Methods in Molecular Biology; vol. 1099).

Research output: Book chapter/Published conference paperChapter in textbook/reference book

Walking
Genome
Genes
Genetic Promoter Regions
Computer Simulation
8 Citations (Scopus)

Genotypic variation in lysophospholipids of milled rice

Tong, C., Liu, L., Waters, D. L. E., Rose, T. J., Bao, J. & King, G. J., 24 Sep 2014, In : Journal of Agricultural and Food Chemistry. 62, 38, p. 9353-9361 9 p.

Research output: Contribution to journalArticle

Lysophospholipids
rice
lysophosphatidylcholine
Lysophosphatidylcholines
starch
2 Citations (Scopus)

The polymerase chain reaction (PCR): General methods

Waters, D. L. E. & Shapter, F. M., 2014, Cereal Genomics: Methods and Protocols. Henry, R. & Furtado, A. (eds.). Totowa, NJ: Humana Press Inc., Vol. 1099. p. 65-75 11 p. (Methods in Molecular Biology; vol. 1099).

Research output: Book chapter/Published conference paperChapter in textbook/reference book

Polymerase Chain Reaction
Cell Division
Molecular Biology
DNA
In Vitro Techniques
2 Citations (Scopus)

Wild Oryza grain physico-chemical properties

Kasem, S., Waters, D. L. E., Ward, R. M., Rice, N. F. & Henry, R. J., Mar 2014, In : Tropical Plant Biology. 7, 1, p. 13-18 6 p.

Research output: Contribution to journalArticle

Oryza
physicochemical properties
rice
amylopectin
amylose
2013
15 Citations (Scopus)

Conservation and utilization of African Oryza genetic resources

Wambugu, P. W., Furtado, A., Le Waters, D., Nyamongo, D. O. & Henry, R. J., 2013, In : Rice. 6, 1, p. 1-13 13 p.

Research output: Contribution to journalReview article

Open Access
genetic resource
Oryza
genetic resources
genome
rice
4 Citations (Scopus)

Molecular Markers for Harnessing Heterosis

Krishnan, G. S., Singh, A. K., Waters, D. L. E. & Henry, R. J., 2013, Molecular Markers in Plants. Henry, R. J. (ed.). 1 ed. Hoboken, N.J. : Wiley-Blackwell, p. 67-80 18 p.

Research output: Book chapter/Published conference paperChapter

22 Citations (Scopus)
1 Downloads (Pure)

Molecular relationships between Australian annual wild rice, Oryza meridionalis, and two related perennial forms

Sotowa, M., Ootsuka, K., Kobayashi, Y., Hao, Y., Tanaka, K., Ichitani, K., Flowers, J. M., Purugganan, M. D., Nakamura, I., Sato, Y. I., Sato, T., Crayn, D., Simon, B., Waters, D. L. E., Henry, R. J. & Ishikawa, R., 2013, In : Rice. 6, 26, p. 1-18 18 p.

Research output: Contribution to journalArticle

Open Access
File
wild rice
Oryza rufipogon
rice
genome
nuclear genome
48 Citations (Scopus)

Phospholipids in rice: Significance in grain quality and health benefits: A review

Liu, L., Waters, D. L. E., Rose, T. J., Bao, J. & King, G. J., 15 Aug 2013, In : Food Chemistry. 139, 1-4, p. 1133-1145 13 p.

Research output: Contribution to journalReview article

Insurance Benefits
Phospholipids
phospholipids
Health
rice
2012
14 Citations (Scopus)

Analysis of adaptive ribosomal gene diversity in wild plant populations from contrasting climatic environments

Shapter, F. M., Fitzgerald, T. L., Waters, D. L. E., McDonald, S., Chivers, I. H., Nevo, E. & Henry, R. J., Jun 2012, In : Plant Signaling and Behavior. 7, 6, p. 602-604 3 p.

Research output: Contribution to journalArticle

wild plants
genes
plant adaptation
wild relatives
dryers
8 Citations (Scopus)

Analysis of starch gene diversity in the wild relatives of Oryza sativa

Kasem, S., Waters, D. L. E. & Henry, R. J., Dec 2012, In : Tropical Plant Biology. 5, 4, p. 286-308 23 p.

Research output: Contribution to journalArticle

wild relatives
Starch
exons
Oryza sativa
Exons
23 Citations (Scopus)
3 Downloads (Pure)

Application of large-scale sequencing to marker discovery in plants

Henry, R. J., Edwards, M., Waters, D. L. E., Gopala Krishnan, S., Bundock, P., Sexton, T. R., Masouleh, A. K., Nock, C. J. & Pattemore, J., Nov 2012, In : Journal of Biosciences. 37, 5, p. 829-841 13 p.

Research output: Contribution to journalArticle

Open Access
File
Genes
genes
Genome
genome
transcriptomics
54 Citations (Scopus)

Chloroplast genome sequence confirms distinctness of Australian and Asian wild rice

Waters, D. L. E., Nock, C. J., Ishikawa, R., Rice, N. & Henry, R. J., 2012, In : Ecology and Evolution. 2, 1, p. 211-217 7 p.

Research output: Contribution to journalArticle

Open Access
wild rice
chloroplast
Oryza sativa
rice
genome
95 Citations (Scopus)

Genome-wide DNA polymorphisms in elite indica rice inbreds discovered by whole-genome sequencing

Subbaiyan, G. K., Waters, D. L. E., Katiyar, S. K., Sadananda, A. R., Vaddadi, S. & Henry, R. J., Aug 2012, In : Plant Biotechnology Journal. 10, 6, p. 623-634 12 p.

Research output: Contribution to journalArticle

Open Access
single nucleotide polymorphism
Single Nucleotide Polymorphism
genetic polymorphism
Genome
rice
70 Citations (Scopus)
3 Downloads (Pure)

SNP in starch biosynthesis genes associated with nutritional and functional properties of rice

Kharabian-Masouleh, A., Waters, D. L. E., Reinke, R. F., Ward, R. & Henry, R. J., 2012, In : Scientific Reports. 2, p. 1-9 9 p., 557.

Research output: Contribution to journalArticle

Open Access
File
Starch
Single Nucleotide Polymorphism
Genes
Cooking
Breeding
2011

BADH genes in wheat and their expression

Shrestha, K. N., Waters, D. LE. & Rice, N., 2011.

Research output: Other contribution to conferenceOther

174 Citations (Scopus)

Chloroplast genome sequences from total DNA for plant identification

Nock, C. J., Waters, D. L. E., Edwards, M. A., Bowen, S. G., Rice, N., Cordeiro, G. M. & Henry, R. J., Apr 2011, In : Plant Biotechnology Journal. 9, 3, p. 328-333 6 p.

Research output: Contribution to journalArticle

Open Access
Chloroplast Genome
Plant DNA
DNA
Chloroplasts
High-Throughput Nucleotide Sequencing
36 Citations (Scopus)

Discovery of polymorphisms in starch-related genes in rice germplasm by amplification of pooled DNA and deeply parallel sequencing

Kharabian-Masouleh, A., Waters, D. L. E., Reinke, R. F. & Henry, R. J., Dec 2011, In : Plant Biotechnology Journal. 9, 9, p. 1074-1085 12 p.

Research output: Contribution to journalArticle

Open Access
Starch
germplasm
Starch Synthase
Single Nucleotide Polymorphism
genetic polymorphism
30 Citations (Scopus)

Genome diversity in wild grasses under environmental stress

Fitzgerald, T. L., Shapter, F. M., McDonald, S., Waters, D. L. E., Chivers, I. H., Drenth, A., Nevo, E. & Henry, R. J., 27 Dec 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 52, p. 21140-21145 6 p.

Research output: Contribution to journalArticle

Poaceae
Hordeum
Genome
Chloroplast Genome
Population

Long range PCR, deep parallel sequencing and multiplexed Maldi-TOF mass spectrometry reveals new SNP variants associated with starch functional properties

Waters, D. LE., Masouleh, A. K., Reinke, R. F. & Henry, R. J., 2011.

Research output: Other contribution to conferenceOther

functional properties
mass spectrometry
starch
rice
rice starch

Plant DNA barcoding using chloroplast genome sequences

Nock, C. J., Waters, D. LE., Shepherd, M., Bundock, P. C. & Henry, R. J., 2011.

Research output: Other contribution to conferenceOther