@inbook{75d0f15deceb4d9c963292f76c5c9983,
title = "A method for discovery of genome-wide SNP between any two genotypes from whole-genome re-sequencing data",
abstract = "Advances in sequencing technologies have aided the discovery of millions of genome-wide DNA polymorphisms such as single-nucleotide polymorphisms (SNPs) and insertion-deletions (InDels) which are an invaluable resource for marker-assisted breeding. Presently available bioinformatics tools assist the discovery of polymorphisms between target genotypes and the reference genome for a range of species. The discovery of polymorphisms between two genotypes within a breeding program is complicated by several factors such as bias in the number of reads from each genotype and residual heterozygosity within each genotype. In this chapter, we describe a novel approach where polymorphisms between a pair of genotypes are discovered from whole-genome re-sequencing data.",
keywords = "Genome-wide polymorphisms, Genotypes, Next-generation sequencing, Pairwise SNPs, Whole-genome re-sequencing",
author = "{Gopala Krishnan}, S. and Waters, {Daniel L.E.} and Henry, {Robert J.}",
note = "Includes bibliographical references.",
year = "2014",
doi = "10.1007/978-1-62703-715-0_24",
language = "English",
isbn = "9781627037143",
volume = "1099",
series = "Methods in Molecular Biology",
publisher = "Humana Press Inc.",
pages = "287--294",
editor = "Henry, {Robert J.} and Angelo Furtado",
booktitle = "Cereal genomics",
}